Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs2894728 | chr6:46930353 | C/G | 1.75E-5 | 403 | 15.03 | 16.37 | 12.5 | KM Plot |
| LGG | rs2919008 | chr10:122597675 | A/C | 2.99E-6 | 400 | 16.27 | 15.3 | 13.67 | KM Plot |
| LGG | rs2919009 | chr10:122591373 | C/T | 8.94E-6 | 407 | 16.27 | 15.2 | 14.43 | KM Plot |
| LGG | rs2920973 | chr2:55528855 | A/T | 5.17E-5 | 401 | 18.7 | 15.68 | 15.18 | KM Plot |
| LGG | rs2924436 | chr11:61224280 | G/T | 7.86E-5 | 407 | 16.68 | 17.67 | 14.5 | KM Plot |
| LGG | rs2943801 | chr11:61233624 | C/T | 7.97E-5 | 407 | 16.68 | 17.67 | 14.53 | KM Plot |
| LGG | rs2943802 | chr11:61233531 | C/T | 7.97E-5 | 407 | 16.68 | 17.67 | 14.53 | KM Plot |
| LGG | rs2943807 | chr11:61196289 | G/A | 3.95E-5 | 406 | 17.73 | 17.7 | 14.47 | KM Plot |
| LGG | rs3011384 | chr10:122593111 | G/A | 2.8E-6 | 402 | 16.27 | 15.3 | 13.67 | KM Plot |
| LGG | rs3017597 | chr11:61222635 | G/A | 7.97E-5 | 406 | 16.68 | 17.67 | 14.5 | KM Plot |
| LGG | rs3017602 | chr11:61206798 | A/G | 2.98E-5 | 407 | 14.6 | 17.2 | 17.73 | KM Plot |
| LGG | rs3018735 | chr11:61210445 | T/C | 3.06E-5 | 406 | 17.73 | 17.67 | 14.5 | KM Plot |
| LGG | rs3019186 | chr11:61236838 | A/G | 7.86E-5 | 407 | 16.68 | 17.67 | 14.5 | KM Plot |
| LGG | rs3019189 | chr11:61207830 | G/C | 2.96E-5 | 407 | 17.73 | 17.67 | 14.5 | KM Plot |
| LGG | rs3019198 | chr11:61179285 | G/A | 0.000101 | 407 | 15.63 | 18.22 | 14.47 | KM Plot |